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Subject: Re: [OMPI users] uninstall
From: Ralph Castain (rhc_at_[hidden])
Date: 2009-06-10 07:28:02


When you built OMPI from hand, you probably configured it with a --
prefix=foo option. Just "rm -rf foo" to uninstall, and then make sure
your PATH and LD_LIBRARY_PATH don't include "foo" any more if you
modified your .login and/or .cshrc files (or whatever you use).

On Jun 10, 2009, at 1:11 AM, Jacob Balthazor wrote:

>
> Hey,
>
> I downloaded compiled, and installed open mpi off the web site but
> was having problems. I then installed open mpi and ins libs via yum.
> Adter that I was able to compile and run mpi programs locally but
> ran into problems when I tried to run them across two computers (see
> output below). I was told that this was probably because I have two
> different copies of openmpi. I uninstalled openmpi via yum and am
> now trying to figure out the best way to uninstall the compiled
> version of openmpi to reinstall with a clean slate. Any suggestions?
>
> -Jacob
>
>
> On Jun 2, 2009, at 4:45 AM, Jeff Squyres wrote:
>
> This looks like you have two different versions of Open MPI
> installed on your two machines (it's hard to tell with the name
> "localhost.localdomain", though -- can you name your two computers
> differently so that you can tell them apart in the output?).
>
> You need to have the same version of Open MPI installed on both
> machines.
>
>
> On Jun 2, 2009, at 3:52 AM, jacob Balthazor wrote:
>
>> Hi,
>>
>> I am just getting my feet wet with openmpi and can't seem to
>> get it running. I installed openmpi and all it's components via yum
>> and am able compile and run programs with mpi locally but not
>> across the two computers. I set up the keyed ssh on both mechines
>> and am able to log into another without asking for a password. From
>> reading online it looks like my problem may stem from an
>> unconfigured .bash_profile as I don't think yum would have
>> configured it for me. My question is where does yum stick the bin
>> and lib files that I need to reference in my profile? What should
>> my bash_profile look like? Thank you for reading and am eagerly
>> awaiting your reply.
>>
>> -Jacob
>>
>> My Profile:
>> # .bash_profile
>> # Get the aliases and functions
>> if [ -f ~/.bashrc ]; then
>> . ~/.bashrc
>> fi
>>
>> # User specific environment and startup programs
>>
>> PATH=$PATH:$HOME/bin
>>
>> export PATH
>>
>> When I try to run it:
>> [beowulf2_at_localhost Desktop]$ mpirun --hostfile hostfile -np 4 a.out
>> [localhost.localdomain:08564] Error: unknown option "--bootproxy"
>> input in flex scanner failed
>> [localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in
>> file base/pls_base_orted_cmds.c at line 275
>> [localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in
>> file pls_rsh_module.c at line 1166
>> [localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in
>> file errmgr_hnp.c at line 90
>> [localhost.localdomain:06428] ERROR: A daemon on node 192.168.0.3
>> failed to start as expected.
>> [localhost.localdomain:06428] ERROR: There may be more information
>> available from
>> [localhost.localdomain:06428] ERROR: the remote shell (see above).
>> [localhost.localdomain:06428] ERROR: The daemon exited unexpectedly
>> with status 2.
>> [localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in
>> file base/pls_base_orted_cmds.c at line 188
>> [localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in
>> file pls_rsh_module.c at line 1198
>> ------------------------------
>> --------------------------------------------
>> mpirun was unable to cleanly terminate the daemons for this job.
>> Returned value Timeout instead of ORTE_SUCCESS.
>> --------------------------------------------------------------------------
>> [beowulf2_at_localhost Desktop]$
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