Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |  

This web mail archive is frozen.

This page is part of a frozen web archive of this mailing list.

You can still navigate around this archive, but know that no new mails have been added to it since July of 2016.

Click here to be taken to the new web archives of this list; it includes all the mails that are in this frozen archive plus all new mails that have been sent to the list since it was migrated to the new archives.

Subject: [OMPI users] Fedora install problem
From: jacob Balthazor (jcb344_at_[hidden])
Date: 2009-06-02 03:52:09


       I am just getting my feet wet with openmpi and can't seem to get it
running. I installed openmpi and all it's components via yum and am able
compile and run programs with mpi locally but not across the two computers.
I set up the keyed ssh on both mechines and am able to log into another
without asking for a password. From reading online it looks like my problem
may stem from an unconfigured .bash_profile as I don't think yum would have
configured it for me. My question is where does yum stick the bin and lib
files that I need to reference in my profile? What should my bash_profile
look like? Thank you for reading and am eagerly awaiting your reply.


My Profile:
# .bash_profile
# Get the aliases and functions
if [ -f ~/.bashrc ]; then
        . ~/.bashrc

# User specific environment and startup programs


export PATH

When I try to run it:
[beowulf2_at_localhost Desktop]$ mpirun --hostfile hostfile -np 4 a.out
[localhost.localdomain:08564] Error: unknown option "--bootproxy"
input in flex scanner failed
[localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in file
base/pls_base_orted_cmds.c at line 275
[localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in file
pls_rsh_module.c at line 1166
[localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in file
errmgr_hnp.c at line 90
[localhost.localdomain:06428] ERROR: A daemon on node failed to
start as expected.
[localhost.localdomain:06428] ERROR: There may be more information available
[localhost.localdomain:06428] ERROR: the remote shell (see above).
[localhost.localdomain:06428] ERROR: The daemon exited unexpectedly with
status 2.
[localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in file
base/pls_base_orted_cmds.c at line 188
[localhost.localdomain:06428] [0,0,0] ORTE_ERROR_LOG: Timeout in file
pls_rsh_module.c at line 1198
mpirun was unable to cleanly terminate the daemons for this job. Returned
value Timeout instead of ORTE_SUCCESS.
[beowulf2_at_localhost Desktop]$