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Subject: [OMPI users] Fwd: open mpi ptoblem with LAM previously installed
From: Dimar Gonzalez (gdimar_at_[hidden])
Date: 2009-05-27 17:45:45


Hello,

I have the following error when I run a job:

It seems that there is no lamd running on the host cbuach.

This indicates that the LAM/MPI runtime environment is not operating.
The LAM/MPI runtime environment is necessary for MPI programs to run
(the MPI program tired to invoke the "MPI_Init" function).

Please run the "lamboot" command the start the LAM/MPI runtime
environment. See the LAM/MPI documentation for how to invoke
"lamboot" across multiple machines.

I added the environment variables in my .bashrc:

PATH=/usr/local/openmpi-1.3.2/bin:$PATH
export PATH
LD_LIBRARY_PATH=/usr/local/openmpi-1.3.2/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH

I tried defining directly the path of the mpirun on the open-mpi folder:

/usr/local/openmpi-1.3.2/bin/mpirun --host ubuntu-frontend -np 8 mb -i
batch_flavescens.txt>log.txt &

but doesn't work, I hope any help to fix this problem.

this is the ompi_info output:

                 Package: Open MPI cbuach_at_cbuach Distribution
                Open MPI: 1.3.2
   Open MPI SVN revision: r21054
   Open MPI release date: Apr 21, 2009
                Open RTE: 1.3.2
   Open RTE SVN revision: r21054
   Open RTE release date: Apr 21, 2009
                    OPAL: 1.3.2
       OPAL SVN revision: r21054
       OPAL release date: Apr 21, 2009
            Ident string: 1.3.2
                  Prefix: /usr/local/openmpi-1.3.2
 Configured architecture: x86_64-unknown-linux-gnu
          Configure host: cbuach
           Configured by: cbuach
           Configured on: Mon May 25 16:08:22 CLT 2009
          Configure host: cbuach
                Built by: cbuach
                Built on: lun may 25 16:15:45 CLT 2009
              Built host: cbuach
              C bindings: yes
            C++ bindings: yes
      Fortran77 bindings: no
      Fortran90 bindings: no
 Fortran90 bindings size: na
              C compiler: gcc
     C compiler absolute: /usr/bin/gcc
            C++ compiler: g++
   C++ compiler absolute: /usr/bin/g++
      Fortran77 compiler: none
  Fortran77 compiler abs: none
      Fortran90 compiler: none
  Fortran90 compiler abs: none
             C profiling: yes
           C++ profiling: yes
     Fortran77 profiling: no
     Fortran90 profiling: no
          C++ exceptions: no
          Thread support: posix (mpi: no, progress: no)
           Sparse Groups: no
  Internal debug support: no
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: no
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
Symbol visibility support: yes
   FT Checkpoint support: no (checkpoint thread: no)
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.3.2)
              MCA memory: ptmalloc2 (MCA v2.0, API v2.0, Component v1.3.2)
           MCA paffinity: linux (MCA v2.0, API v2.0, Component v1.3.2)
               MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.3.2)
               MCA carto: file (MCA v2.0, API v2.0, Component v1.3.2)
           MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.3.2)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.3.2)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.3.2)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA dpm: orte (MCA v2.0, API v2.0, Component v1.3.2)
              MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.3.2)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.3.2)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: sync (MCA v2.0, API v2.0, Component v1.3.2)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.3.2)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.3.2)
               MCA mpool: fake (MCA v2.0, API v2.0, Component v1.3.2)
               MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.3.2)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA pml: cm (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA pml: csum (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.3.2)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.3.2)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.3.2)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.3.2)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.3.2)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.3.2)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.3.2)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.3.2)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.3.2)
              MCA routed: linear (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.3.2)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.3.2)
              MCA errmgr: default (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ess: env (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ess: hnp (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ess: singleton (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ess: slurm (MCA v2.0, API v2.0, Component v1.3.2)
                 MCA ess: tool (MCA v2.0, API v2.0, Component v1.3.2)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.3.2)
             MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.3.2)

Thanks

-
Dímar González S.
Estudiante Ingienería Civil en Informática
Universidad Austral de Chile