Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |  

This web mail archive is frozen.

This page is part of a frozen web archive of this mailing list.

You can still navigate around this archive, but know that no new mails have been added to it since July of 2016.

Click here to be taken to the new web archives of this list; it includes all the mails that are in this frozen archive plus all new mails that have been sent to the list since it was migrated to the new archives.

Subject: [OMPI users] Issue with PBS Pro
From: Kiril Dichev (dichev_at_[hidden])
Date: 2009-01-29 10:32:02


I am trying to run with Open MPI 1.3 on a cluster using PBS Pro:

pbs_version = PBSPro_9.2.0.81361

However, after compiling with these options:

--prefix=/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads CC=/opt/intel/cce/10.1.015/bin/icc CXX=/opt/intel/cce/10.1.015/bin/icpc CPP="/opt/intel/cce/10.1.015/bin/icc -E" FC=/opt/intel/fce/10.1.015/bin/ifort F90=/opt/intel/fce/10.1.015/bin/ifort F77=/opt/intel/fce/10.1.015/bin/ifort --enable-mpi-f90 --with-tm=/usr/pbs/ --enable-mpi-threads=yes --enable-contrib-no-build=vt

I get runtime errors when running on more than one reserved node
even /bin/hostname:

/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/bin/mpirun -np 5 /bin/hostname
/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/bin/mpirun: symbol lookup error: /home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/lib/openmpi/ undefined symbol: tm_init

When running on one node only, I don't get this error.

Now, I see that I only have static PBS libraries so I tried to compile
this component statically. I added to the above configure:

However, nothing changed. The same errors occurr.

But if I compile Open MPI only with static libraries ("--enable-static
--disable-shared"), the MPI (or non-MPI) programs run OK.

Can you help me here ?


Dipl.-Inf. Kiril Dichev
Tel.: +49 711 685 60492
E-mail: dichev_at_[hidden]
High Performance Computing Center Stuttgart (HLRS)
Universität Stuttgart
70550 Stuttgart