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Subject: Re: [OMPI users] mpiblast + openmpi + gridengine job faila to run
From: Joe Landman (landman_at_[hidden])
Date: 2008-12-24 09:33:00


Reuti wrote:
> Hi,
>
> Am 24.12.2008 um 07:55 schrieb Sangamesh B:
>
>> Thanks Reuti. That sorted out the problem.
>>
>> Now mpiblast is able to run, but only on single node. i.e. mpiformatdb
>> -> 4 fragments, mpiblast - 4 processes. Since each node is having 4
>> cores, the job will run on a single node and works fine. With 8
>> processes, the job fails with following error message:

First, there is an mpiblast list I'd suggest subscribing to.

Second, mpiformatdb, despite its name, is not an mpi code. It doesn't
run across multiple nodes, or with multiple threads. See the mpiblast
site (www.mpiblast.org) for more details and documentation on how to
use/run it.

Joe

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