Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |   all Open MPI User's mailing list

Subject: Re: [OMPI users] OMPI link error with petsc 2.3.3
From: Yann JOBIC (jobic_at_[hidden])
Date: 2008-10-08 08:14:50


Hello,

I used cc to compile. I tried to use mpicc/mpif90 to compile PETSC, but
it changed nothing.
I still have the same error.

I'm giving you the whole compile proccess :
4440p-jobic% gmake solv_ksp
mpicc -o solv_ksp.o -c -fPIC -m64 -I/opt/lib/petsc
-I/opt/lib/petsc/bmake/amd-64-openmpi_no_debug -I/opt/lib/petsc/include
-I/opt/SUNWhpc/HPC8.0/include -I/opt/SUNWhpc/HPC8.0/include/amd64 -I.
-D__SDIR__="" solv_ksp.c
mpicc -fPIC -m64 -o solv_ksp solv_ksp.o
-R/opt/lib/petsc/lib/amd-64-openmpi_no_debug
-L/opt/lib/petsc/lib/amd-64-openmpi_no_debug -lpetscsnes -lpetscksp
-lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -lsunperf -lsunmath -lm
-ldl -R/opt/mx/lib/amd64 -R/opt/SUNWhpc/HPC8.0/lib/amd64
-R/opt/SUNWhpc/HPC8.0/lib/amd64 -L/opt/SUNWhpc/HPC8.0/lib/amd64 -lmpi
-lopen-rte -lopen-pal -lnsl -lrt -lm -lsocket -lmpi_f77 -lmpi_f90
-R/opt/SUNWspro/lib/amd64 -R/opt/SUNWspro/lib/amd64
-L/opt/SUNWspro/lib/amd64 -R/opt/SUNWspro/prod/lib/amd64
-L/opt/SUNWspro/prod/lib/amd64 -R/usr/ccs/lib/amd64 -L/usr/ccs/lib/amd64
-R/lib/64 -L/lib/64 -R/usr/lib/64 -L/usr/lib/64 -lm -lfui -lfai -lfsu
-lsunmath -lmtsk -lm -ldl -R/usr/ucblib
ld: warning: symbol `mpi_fortran_status_ignore_' has differing sizes:
        (file /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so value=0x8; file
/opt/SUNWhpc/HPC8.0/lib/amd64/libmpi_f90.so value=0x14);
        /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so definition taken
/usr/bin/rm -f solv_ksp.o

Thanks for your help,

Yann

Terry Dontje wrote:
> Yann,
>
> How were you trying to link your code with PETSc? Did you use mpif90
> or mpif77 wrappers or were you using cc or mpicc wrappers? I ran some
> basic tests that test the usage of MPI_STATUS_IGNORE using mpif90 (and
> mpif77) and it works fine. However I was able to generate a similar
> error as you did when tried to link things with the cc program.
> If you are using cc to link could you possibly try to use mpif90 to
> link your code?
>
> --td
>
> Date: Tue, 07 Oct 2008 16:55:14 +0200
> From: "Yann JOBIC" <jobic_at_[hidden]>
> Subject: [OMPI users] OMPI link error with petsc 2.3.3
> To: Open MPI Users <users_at_[hidden]>
> Message-ID: <48EB7852.6070404_at_[hidden]>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Hello,
>
> I'm using openmpi 1.3r19400 (ClusterTools 8.0), with sun studio 12,
> and solaris 10u5
>
> I've got this error when linking a PETSc code :
> ld: warning: symbol `mpi_fortran_status_ignore_' has differing sizes:
> (file /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so value=0x8; file
> /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi_f90.so value=0x14);
> /opt/SUNWhpc/HPC8.0/lib/amd64/libmpi.so definition taken
>
>
> Isn't it very strange ?
>
> Have you got any idea on the way to solve it ?
>
> Many thanks,
>
> Yann
>
>>
>
> _______________________________________________
> users mailing list
> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users

-- 
___________________________
Yann JOBIC
HPC engineer
Polytech Marseille DME
IUSTI-CNRS UMR 6595
Technopôle de Château Gombert
5 rue Enrico Fermi
13453 Marseille cedex 13
Tel : (33) 4 91 10 69 39
  ou  (33) 4 91 10 69 43
Fax : (33) 4 91 10 69 69