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Subject: Re: [OMPI users] Problems compiling OPENMPI !!
From: Jeff Squyres (jsquyres_at_[hidden])
Date: 2008-04-22 08:49:10


Please send all the information listed here:

http://www.open-mpi.org/community/help/

On Apr 22, 2008, at 8:18 AM, koppole_at_[hidden] wrote:

> Hi Jeff,
>
> Yes. my C++ compiler works quite well. I have compiled and run a
> number
> of programs with it. Further more, I could comfortably install mpich2
> with this compiler with no problems.
>
>
>
> What is surprising is : during configure ... I get:
>
> ......
>
> =
> =
> =
> ======================================================================
> ===
>
> == Modular Component Architecture (MCA) setup
>
> =
> =
> =
> ======================================================================
> ===
>
> checking for subdir args...
> '--prefix=/usr/people/camm/kopposa1/openmpi' 'FC=ifort64'
> 'F77=ifort64'
> 'F95=ifort64' 'CC=icc64'
>
> 'CXX=icpc'
>
> checking for gcc... gcc
>
> checking whether we are using the GNU Objective C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> .......
>
>
>
> Intel C compiler is not a gnu objective C compiler. I don't know why
> openmpi thinks that this is a GNU Compiler.
>
>
>
> Thanks for your time,
>
> Cheers,
>
> Sampath.
>
>
>
>
>
> From: Jeff Squyres (jsquyres_at_[hidden])
>
> Date: 2008-04-22 08:05:16
>
>
>
> Is your C++ compiler installer properly? Can you build and run other C
>
> ++ programs that use the STL?
>
>
>
>
>
> -----Original Message-----
>
> From: koppole_at_[hidden]
>
> To: users_at_[hidden]
>
> Sent: Tue, 22 Apr 2008 11:01 am
>
> Subject: Problems compiling OPENMPI !!
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> Hello there,
>
>
>
>
>
> I downloaded openmpi-1.2.5.tar and "un-tar"'ed it with tar -xvf
>
> openmpi-1.2.5.tar which created a directory openmpi-1.2.5.
>
>
>
>
>
>
>
>
>
> I then created a build directory and called
>
>
>
>
>
> ../openmpi-1.2.5/configure --prefix=$home/openmpi FC=ifort64
>
> F77=ifort64 F95=ifort64 CC=icc64 CXX=icpc | & tee config.out
>
>
>
>
>
>
>
>
>
> Everything went fine.
>
>
>
>
>
> I then said : make -j 8 | & tee make.out and the compilation crashed
>
> with:
>
>
>
>
>
>
>
>
>
> /bin/sh ../../../libtool --tag=CXX --mode=link icpc -O3 -DNDEBUG
>
> -finline-functions -pthread -export-dynamic -o libmpi_cxx.la -rpath
>
> /usr/people/camm/kopposa1/openmpi/lib mpicxx.lo intercepts.lo comm.lo
>
> datatype.lo file.lo win.lo -lnsl -lutil
>
>
>
>
>
> libtool: link: icpc -shared .libs/mpicxx.o .libs/intercepts.o
>
> .libs/comm.o .libs/datatype.o .libs/file.o .libs/win.o -lnsl -lutil
>
> -L/usr/prog/intel/cce/101015/lib
>
> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/
>
> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -limf -
> lsvml
>
> -lipgo /usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a
>
> -L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src
>
> -L/scratch/gcc/x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs
>
> -L/scratch/gcc/./gcc -L/lib/../lib64 -L/usr/lib/../lib64 -lm -lgcc
>
> -lintlc -lpthread -lgcc_s -lirc_s -ldl -lc -pthread -pthread
>
> -Wl,-soname -Wl,libmpi_cxx.so.0 -o .libs/libmpi_cxx.so.0.0.0
>
>
>
>
>
> ld:
>
> /usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a(ios_init.o):
>
> relocation R_X86_64_32 against `pthread_cancel' can not be used when
>
> making a shared object; recompile with -fPIC
>
>
>
>
>
> /usr/people/camm/kopposa1/gcc64/lib/../lib64/libstdc++.a: could not
>
> read symbols: Bad value
>
>
>
>
>
> make[3]: *** [libmpi_cxx.la] Error 1
>
>
>
>
>
> make[3]: Leaving directory `/scratch/openmpi/ompi/mpi/cxx'
>
>
>
>
>
> make[2]: *** [all-recursive] Error 1
>
>
>
>
>
> make[2]: Leaving directory `/scratch/openmpi/ompi/mpi'
>
>
>
>
>
> make[1]: *** [all-recursive] Error 1
>
>
>
>
>
> make[1]: Leaving directory `/scratch/openmpi/ompi'
>
>
>
>
>
> make: *** [all-recursive] Error 1
>
>
>
>
>
>
>
>
>
> FYI: I am attaching the zipped make.out and config.out files.
>
>
>
>
>
>
>
>
>
> Thanks a lot for your help,
>
>
>
>
>
> Cheers,
>
>
>
>
>
> Sampath.
>
>
>
>
>
>
>
>
>
> Sampath Koppole,
>
>
>
>
>
> The Computational Molecular Biophysics Group,
>
>
>
>
>
> Interdisciplinary Center for Scientific Computing (IWR),
>
>
>
>
>
> 368, Im Neuenheimer Feld,
>
>
>
>
>
> Heidelberg. D-69120.
>
>
>
>
>
> Germany.
>
>
>
>
>
> Web Home : http://www.sampath.koppole.com
>
>
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>
>
> _______________________________________________
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-- 
Jeff Squyres
Cisco Systems