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Subject: Re: [OMPI users] openMPI on 64 bit SUSE 10.2 OS
From: Hsieh, Pei-Ying (MED US) (pei-ying.hsieh_at_[hidden])
Date: 2008-02-13 09:28:37


Hi, Mark,
 
When I installed HYPRE, I simply did "./configure
--prefix=/usr/local/hypre2.0", then make, make install. All libraries
seems to be static libraries.
 
As for openmpi, I did "./configure --prefix=/usr/local/openmpi
--enable-static --disable-shared", then, make all install (elmer prefers
statically linked). So, all openmpi static library should resides in
/usr/local/openmpi. A simple hello_mpi.c (.f90) ran fine.
 
During elmer configuration, one of the steps is to build blas/parpack
libraries. Which was successful (I got libparpack.a under
ELMER_HOME/lib). It is not clear to me why at the final step of elmer
configuration, it complains about not finding HYPRE and parpack.
 
I also suspect about the /usr/lib64 business. Trying to sort out
whether this is an openMPI issue (on 64 bit SuSE) or elmer issue.
 
Thanks a lot!
 
Best,
 
Pei

________________________________

From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]] On
Behalf Of Mark Kosmowski
Sent: Tuesday, February 12, 2008 5:10 PM
To: users_at_[hidden]
Subject: Re: [OMPI users] openMPI on 64 bit SUSE 10.2 OS

Are you pointing to the 64-bit build of HYPRE? For that matter, like
Jeff asked, are you sure that each library path that you are defining
goes to a 64-bit library path?
 
Good luck,
 
Mark E. Kosmowski

        peiying_at_saturn:~/elmer/elmer-5.4.0/fem-5.4.0> export
        
LD_LIBRARY_PATH=/usr/local/openmpi/lib:/usr/local/hypre2.0/lib:$LD_LIBRA
        RY_PATH
        peiying_at_saturn:~/elmer/elmer-5.4.0/fem-5.4.0> ./configure
        --prefix=$ELMER_HOME --with-mpi-dir=$MPI_HOME
        ...

 
 

        checking for Fortran 77 libraries of mpif90...
        -L/usr/local/hypre2.0/lib -L/usr/local/lib
        -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.. -lHYPRE
-lmpi_f90
        checking for Fortran libraries of mpif90...
-L/usr/local/hypre2.0/lib
        -L/usr/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2
        -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64
        -L/lib/../lib64 -L/usr/lib/../lib64
        
-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/l
        ib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.. -lHYPRE
-lmpi_f90
        checking for dseupd_ in -larpack... yes
        checking for pdneupd_ in -lparpack... no
        configure: WARNING: No parallel arpack found.
        checking for HYPRE_IJMatrixCreate in -lHYPRE... no
        configure: WARNING: HYPRE not found, some functionaly will be
disabled.
        checking for umf4def_ in -lumfpack... yes
        checking for mtc_init in -lmatc... yes
        checking for main in -lm... yes
        configure: error: The MPI version needs parpack. Disabling MPI.
        peiying_at_saturn:~/elmer/elmer-5.4.0/fem-5.4.0>
        
        
        -------------------------------------
        Pei-Ying Hsieh, Ph.D.
        Staff Product Engineer
        Siemens Healthcare Diagnostics Inc.
        511 Benedict Ave., MS 32
        Tarrytown, NY 10591
        USA
        Phone: (914)524-3146
        fax: (914)524-2580
        email: Pei-Ying.Hsieh_at_[hidden]
        www.siemens.com/diagnostics
        
        
        What puzzles me is that, on 32 bit OpenSUSE, I was able to
compile elmer
        solver without any issue using the same script. I am planning
to use
        HYPRE library, but, configure file indicated that it cannot find
hypre
        either which is another puzzle to me. I will look into this
further.
        
        Best,
        
        pei
        
        
        Is it possible that this could be a problem with /usr/lib64 as
opposed
        to /usr/lib?
        
        Just a thought...
        
        Jeff F. Pummill
        Senior Linux Cluster Administrator
        University of Arkansas
        //
        
        
        

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