There are a couple of bugs in the configure scripts regarding threads
In ompi_check_pthread_pids.m4 the actual code for testing is wrong and
is also missing a CFLAG save/add-THREAD_CFLAGS/restore resulting in the
linking always failing for the -pthread test with gcc.
config.log looks like this.
configure:50353: checking if threads have different pids (pthreads on
configure:50409: gcc -o conftest -DNDEBUG -march=k8 -O3 -msse -msse2
-maccumulate-outgoing-args -finline-functions -fno-strict-aliasing
-fexceptions conftest.c -lnsl -lutil -lm >&5
conftest.c: In function 'checkpid':
conftest.c:327: warning: cast to pointer from integer of different size
/tmp/ccqUaAns.o: In function `main':conftest.c:(.text+0x1f): undefined
reference to `pthread_create'
:conftest.c:(.text+0x2e): undefined reference to `pthread_join'
collect2: ld returned 1 exit status
configure:50412: $? = 1
configure: program exited with status 1
Adding the CFLAGS save/add/restore make the code return the right answer
both on systems with the old pthreads implementation and NPTL based
systems. BUT, the code as it stands is technically incorrect.
The patch have a corrected version.
There is also two bugs in ompi_config_pthreads.m4.
In OMPI_INTL_POSIX_THREADS_LIBS_CXX it is incorrectly setting
PTHREAD_LIBS to $pl, in the then-part of the second if-statement, which
at the time isn't set yet and forgetting to reset LIBS on failure in the
bottom most if-else case in the for pl loop.
In OMPI_INTL_POSIX_THREADS_LIBS_FC it is resetting LIBS whether
succesfull or not resulting in -lpthread missing when checking for
PTHREAD_MUTEX_ERRORCHECK_NP at least for some versions of pgi, (6.1 and
older fails, 7.0 seems to always add -lpthread with pgf77 as linker)
The output from configure in such a case looks like this:
checking if C compiler and POSIX threads work with -lpthread... yes
checking if C++ compiler and POSIX threads work with -lpthread... yes
checking if F77 compiler and POSIX threads work with -lpthread... yes
checking for PTHREAD_MUTEX_ERRORCHECK_NP... no
checking for PTHREAD_MUTEX_ERRORCHECK... no
(OS: Ubuntu Dapper, Compiler: pgi 6.1)
There is also a problem in the F90 modules include flag search.
The test currently does:
$FC -c conftest-module.f90
This doesn't work if one has set FCFLAGS=-g in the environment.
At least not with pgf90 since it needs the debug symbols from
conftest-module.o to be able to link.
You have to either add conftest-module.o to the compile line of conftest
or make it a three-stager, $FC -c conftest-module.f90; $FC -c
conftest.f90; $FC conftest.o conftest-module.o
Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden
Internet: ake_at_[hidden] Phone: +46 90 7866134 Fax: +46 90 7866126
Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se