Hi
I have found a solution to my problem with executing a MPI program from within a MPI program via a system call.
A related problem has been discussed in the thread: “Recursive use of orterun”.
The problem was the setup and export of environment variables.
I solved my problem by adding the following to the script starting the second MPI program:
for i in $(env | grep OMPI_MCA |sed 's/=/ /' | awk '{print $1}')
do
unset $i
done
This clear the environment for the child process for all variables with name starting with “OMPI_NCA”
Regards
Per Madsen
Senior scientist
AARHUS UNIVERSITET / UNIVERSITY OF AARHUS
Det Jordbrugsvidenskabelige Fakultet / Faculty of Agricultural Sciences
Forskningscenter Foulum / Research Centre Foulum
Genetik og Bioteknologi / Dept. of Genetics and Biotechnology
Blichers Allé 20, P.O. BOX 50
DK-8830 Tjele
|
![[Flag]](../../../../../community/mirrors/flag-us.gif){kind=small}