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From: Edmund Sumbar (esumbar_at_[hidden])
Date: 2007-04-24 09:36:54


John Borchardt wrote:
> I was hoping someone could help me with the following situation. I have a
> program which has no MPI support that I'd like to run "in parallel" by
> running a portion of my total task on N CPUs of a PBS/Maui/Open-MPI
> cluster. (The algorithm is such that there is no real need for MPI, I am
> just as well-off running N processes on N CPUs as I would be adding MPI
> support to my program and then running on N CPUs.)
>
> So it's easy enough to set up a Perl script to submit N jobs to the queue to
> run on N nodes. But, my cluster has two CPUs per node, and I am not
> RAM-limited, so I'd like to run two serial jobs per node, one on each node
> CPU. From what my admin tells me, I must use the mpiexec command to run my
> program so that the scheduler knows to run my program on the nodes which it
> has assigned to me.
>
> In my PBS script (this is one of N/2 similar scripts),
>
> #!/bin/bash
> #PBS -l nodes=1:ppn=2
> #PBS -l walltime=1:00:00:00
> mpiexec -pernode program-executable<inputfile1>outputfile1
> mpiexec -pernode program-executable<inputfile2>outputfile2

Hi,

To run two serial programs on one dual-cpu node, try

#!/bin/bash
#PBS -l nodes=1:ppn=2
#PBS -l walltime=1:00:00:00
program-executable<inputfile1>outputfile1 &
program-executable<inputfile2>outputfile2
wait

-- 
Ed[mund [Sumbar]]