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From: Bas van der Vlies (basv_at_[hidden])
Date: 2007-04-11 13:00:49


Hello,

  I am trying to run a xhpl (linpack) and after a while a get these
errors. I use a simple blas library

{{{
B-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x317700 (3241728) extent
8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x326180
(3301760) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x334c00
(3361792) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x343680
(3421824) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x352100
(3481856) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x360b80
(3541888) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 3661 disp 0x609327c0
(1620256704) extent 8 (size 29288)
-------G---[---][---] MPI_END_LOOP prev 61 elements first elem
displacement 0 size of data 2074088

[ib-r5n6.irc.sara.nl:11140] ../../ompi/datatype/datatype_pack.h:38
         Pointer 0xa7f36278 size 1960 is outside
[0xa7bcd980,0x85073a8] for
                 base ptr 0xa7bcd980 count 1 and data
                 [ib-r5n6.irc.sara.nl:11140] Datatype 0x8462888[]
size 2074088 align 4 id 0 length 184 used 61
                 true_lb 0 true_ub 1620285992 (true_extent
1620285992) lb 0 ub 1620285992 (extent 1620285992)
                 nbElems 2592type 11 count ints 62 count disp 61
count datatype 61
                 ints: 61 4200 4200 4200 4200 4200 4200 4200 4200
4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200
4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200
4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 4200
4200 4200 4200 4200 4200 4200 4200 4200 4200 4200 3661
                 MPI_Aint: 0 60032 120064 180096 240128 300160 360192
420224 480256 540288 600320 660352 720384 780416 840448 900480 960512
1020544 1080576 1140608 1200640 1260672 1320704 1380736 1440768
1500800 1560832 1620864 1680896 1740928 1800960 1860992 1921024
1981056 2041088 2101120 2161152 2221184 2281216 2341248 2401280
2461312 2521344 2581376 2641408 2701440 2761472 2821504 2881536
2941568 3001600 3061632 3121664 3181696 3241728 3301760 3361792
3421824 3481856 3541888 1620043488
                 types: (61 * MPI_DOUBLE)
                 61 loops 0 flags 2 (commited )-c-----G---[---][---]
                    contain MPI_DOUBLE
cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x352100
(3481856) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 4260 disp 0x360b80
(3541888) extent 8 (size 34080)
-cC---P-DB-[ C ][ERR] MPI_DOUBLE count 3661 disp 0x609327c0
(1620256704) extent 8 (size 29288)
-------G---[---][---] MPI_END_LOOP prev 61 elements first elem
displacement 0 size of data 2074088

[ib-r5n6.irc.sara.nl:11140] ../../ompi/datatype/datatype_pack.h:38
         Pointer 0x8500140 size 29288 is outside
[0xa7bcd980,0x85073a8] for
                 base ptr 0xa7bcd980 count 1 and data
                 [ib-r5n6.irc.sara.nl:11140] Datatype 0x8462888[]
size 2074088 align 4 id 0 length 184 used 61
                 true_lb 0 true_ub 1620285992 (true_extent
1620285992) lb 0 ub 1620285992 (extent 1620285992)
                 nbElems 259261 loops 0 flags 2 (commited )-c-----G---
[---][---]
                    contain MPI_DOUBLE
}}}

ompi_info:
{{{
                Open MPI: 1.2.1a0r14297M
    Open MPI SVN revision: r14297M
                 Open RTE: 1.2.1a0r14297M
    Open RTE SVN revision: r14297M
                     OPAL: 1.2.1a0r14297M
        OPAL SVN revision: r14297M
                   Prefix: /usr/local/gnu-openmpi-1.2.1p0
Configured architecture: i686-pc-linux-gnu
            Configured by: root
            Configured on: Wed Apr 11 13:11:09 CEST 2007
           Configure host: ib-r1n1.irc.sara.nl
                 Built by: root
                 Built on: Wed Apr 11 13:16:36 CEST 2007
               Built host: ib-r1n1.irc.sara.nl
               C bindings: yes
             C++ bindings: yes
       Fortran77 bindings: yes (all)
       Fortran90 bindings: yes
Fortran90 bindings size: small
               C compiler: gcc
      C compiler absolute: /usr/bin/gcc
             C++ compiler: g++
    C++ compiler absolute: /usr/bin/g++
       Fortran77 compiler: gfortran
   Fortran77 compiler abs: /usr/bin/gfortran
       Fortran90 compiler: gfortran
   Fortran90 compiler abs: /usr/bin/gfortran
              C profiling: yes
            C++ profiling: yes
      Fortran77 profiling: yes
      Fortran90 profiling: yes
           C++ exceptions: no
           Thread support: posix (mpi: no, progress: no)
   Internal debug support: yes
      MPI parameter check: runtime
Memory profiling support: yes
Memory debugging support: yes
          libltdl support: yes
    Heterogeneous support: yes
mpirun default --prefix: yes
            MCA backtrace: execinfo (MCA v1.0, API v1.0, Component
v1.2.1)
               MCA memory: ptmalloc2 (MCA v1.0, API v1.0, Component
v1.2.1)
            MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.2.1)
            MCA maffinity: first_use (MCA v1.0, API v1.0, Component
v1.2.1)
                MCA timer: linux (MCA v1.0, API v1.0, Component v1.2.1)
            MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
            MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
                 MCA coll: basic (MCA v1.0, API v1.0, Component v1.2.1)
                 MCA coll: self (MCA v1.0, API v1.0, Component v1.2.1)
                 MCA coll: sm (MCA v1.0, API v1.0, Component v1.2.1)
                 MCA coll: tuned (MCA v1.0, API v1.0, Component v1.2.1)
                   MCA io: romio (MCA v1.0, API v1.0, Component v1.2.1)
                MCA mpool: openib (MCA v1.0, API v1.0, Component v1.2.1)
                MCA mpool: sm (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA pml: cm (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA bml: r2 (MCA v1.0, API v1.0, Component v1.2.1)
               MCA rcache: rb (MCA v1.0, API v1.0, Component v1.2.1)
               MCA rcache: vma (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA btl: openib (MCA v1.0, API v1.0.1, Component
v1.2.1)
                  MCA btl: self (MCA v1.0, API v1.0.1, Component v1.2.1)
                  MCA btl: sm (MCA v1.0, API v1.0.1, Component v1.2.1)
                  MCA btl: tcp (MCA v1.0, API v1.0.1, Component v1.0)
                 MCA topo: unity (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA osc: pt2pt (MCA v1.0, API v1.0, Component v1.2.1)
               MCA errmgr: hnp (MCA v1.0, API v1.3, Component v1.2.1)
               MCA errmgr: orted (MCA v1.0, API v1.3, Component v1.2.1)
               MCA errmgr: proxy (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA gpr: null (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA gpr: replica (MCA v1.0, API v1.0, Component
v1.2.1)
                  MCA iof: proxy (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA iof: svc (MCA v1.0, API v1.0, Component v1.2.1)
                   MCA ns: proxy (MCA v1.0, API v2.0, Component v1.2.1)
                   MCA ns: replica (MCA v1.0, API v2.0, Component
v1.2.1)
                  MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
                  MCA ras: dash_host (MCA v1.0, API v1.3, Component
v1.2.1)
                  MCA ras: gridengine (MCA v1.0, API v1.3, Component
v1.2.1)
                  MCA ras: localhost (MCA v1.0, API v1.3, Component
v1.2.1)
                  MCA ras: slurm (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA ras: tm (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA rds: hostfile (MCA v1.0, API v1.3, Component
v1.2.1)
                  MCA rds: proxy (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA rds: resfile (MCA v1.0, API v1.3, Component
v1.2.1)
                MCA rmaps: round_robin (MCA v1.0, API v1.3, Component
v1.2.1)
                 MCA rmgr: proxy (MCA v1.0, API v2.0, Component v1.2.1)
                 MCA rmgr: urm (MCA v1.0, API v2.0, Component v1.2.1)
                  MCA rml: oob (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA pls: gridengine (MCA v1.0, API v1.3, Component
v1.2.1)
                  MCA pls: proxy (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA pls: rsh (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA pls: slurm (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA pls: tm (MCA v1.0, API v1.3, Component v1.2.1)
                  MCA sds: env (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA sds: pipe (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA sds: seed (MCA v1.0, API v1.0, Component v1.2.1)
                  MCA sds: singleton (MCA v1.0, API v1.0, Component
v1.2.1
}}}

--
Bas van der Vlies
basv_at_[hidden]