Open MPI User's Mailing List Archives

From: Peng Wang (pewang_at_[hidden])
Date: 2006-08-03 16:04:46

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Hi, there:

How are you guys doing?

I got a seg fault at the beginning of the Aztec library
an application is using, please find the attached config.log.gz
and the following stack trace and ompi_info output:

The following stack trace repeats for each process:
====

Failing at addr:(nil)
Signal:11 info.si_errno:0(Success) si_code:128()
Failing at addr:(nil)
[0] func:pgeofe [0x606665]
[1] func:/lib64/tls/libpthread.so.0 [0x3f8460c420]
[2] func:pgeofe(MPI_Comm_size+0x4d) [0x549c5d]
[3] func:pgeofe(parallel_info+0x3e) [0x4fcffe]
[4] func:pgeofe(AZ_set_proc_config+0x34) [0x4e8594]
[5] func:pgeofe(MAIN__+0xb2) [0x44ba8a]
[6] func:pgeofe(main+0x32) [0x4420aa]
[7] func:/lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x3f83b1c4bb]
[8] func:pgeofe [0x441fea]
*** End of error message ***

====

ompi_info output:

                 Open MPI: 1.1
    Open MPI SVN revision: r10477
                 Open RTE: 1.1
    Open RTE SVN revision: r10477
                     OPAL: 1.1
        OPAL SVN revision: r10477
                   Prefix: /home/pewang/openmpi
  Configured architecture: x86_64-unknown-linux-gnu
            Configured by: pewang
            Configured on: Thu Aug 3 14:22:22 EDT 2006
           Configure host: bl-geol-karst.geology.indiana.edu
                 Built by: pewang
                 Built on: Thu Aug 3 14:34:17 EDT 2006
               Built host: bl-geol-karst.geology.indiana.edu
               C bindings: yes
             C++ bindings: yes
       Fortran77 bindings: yes (all)
       Fortran90 bindings: yes
  Fortran90 bindings size: small
               C compiler: gcc
      C compiler absolute: /usr/bin/gcc
             C++ compiler: g++
    C++ compiler absolute: /usr/bin/g++
       Fortran77 compiler: ifort
   Fortran77 compiler abs: /opt/intel/fce/9.0/bin/ifort
       Fortran90 compiler: ifort
   Fortran90 compiler abs: /opt/intel/fce/9.0/bin/ifort
              C profiling: yes
            C++ profiling: yes
      Fortran77 profiling: yes
      Fortran90 profiling: yes
           C++ exceptions: no
           Thread support: posix (mpi: yes, progress: no)
   Internal debug support: no
      MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
          libltdl support: yes
               MCA memory: ptmalloc2 (MCA v1.0, API v1.0, Component v1.1)
            MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.1)
            MCA maffinity: first_use (MCA v1.0, API v1.0, Component v1.1)
            MCA maffinity: libnuma (MCA v1.0, API v1.0, Component v1.1)
                MCA timer: linux (MCA v1.0, API v1.0, Component v1.1)
            MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
            MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
                 MCA coll: basic (MCA v1.0, API v1.0, Component v1.1)
                 MCA coll: hierarch (MCA v1.0, API v1.0, Component v1.1)
                 MCA coll: self (MCA v1.0, API v1.0, Component v1.1)
                 MCA coll: sm (MCA v1.0, API v1.0, Component v1.1)
                 MCA coll: tuned (MCA v1.0, API v1.0, Component v1.1)
                MCA mpool: sm (MCA v1.0, API v1.0, Component v1.1)
                  MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.1)
                  MCA bml: r2 (MCA v1.0, API v1.0, Component v1.1)
               MCA rcache: rb (MCA v1.0, API v1.0, Component v1.1)
                  MCA btl: self (MCA v1.0, API v1.0, Component v1.1)
                  MCA btl: sm (MCA v1.0, API v1.0, Component v1.1)
                  MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0)
                 MCA topo: unity (MCA v1.0, API v1.0, Component v1.1)
                  MCA osc: pt2pt (MCA v1.0, API v1.0, Component v1.0)
                  MCA gpr: null (MCA v1.0, API v1.0, Component v1.1)
                  MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.1)
                  MCA gpr: replica (MCA v1.0, API v1.0, Component v1.1)
                  MCA iof: proxy (MCA v1.0, API v1.0, Component v1.1)
                  MCA iof: svc (MCA v1.0, API v1.0, Component v1.1)
                   MCA ns: proxy (MCA v1.0, API v1.0, Component v1.1)
                   MCA ns: replica (MCA v1.0, API v1.0, Component v1.1)
                  MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
                  MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.1)
                  MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.1)
                  MCA ras: localhost (MCA v1.0, API v1.0, Component v1.1)
                  MCA ras: slurm (MCA v1.0, API v1.0, Component v1.1)
                  MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.1)
                  MCA rds: resfile (MCA v1.0, API v1.0, Component v1.1)
                MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.1)
                 MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.1)
                 MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.1)
                  MCA rml: oob (MCA v1.0, API v1.0, Component v1.1)
                  MCA pls: fork (MCA v1.0, API v1.0, Component v1.1)
                  MCA pls: rsh (MCA v1.0, API v1.0, Component v1.1)
                  MCA pls: slurm (MCA v1.0, API v1.0, Component v1.1)
                  MCA sds: env (MCA v1.0, API v1.0, Component v1.1)
                  MCA sds: seed (MCA v1.0, API v1.0, Component v1.1)
                  MCA sds: singleton (MCA v1.0, API v1.0, Component v1.1)
                  MCA sds: pipe (MCA v1.0, API v1.0, Component v1.1)
                  MCA sds: slurm (MCA v1.0, API v1.0, Component v1.1)

Thanks,
Peng

===============================================
Peng Wang, HPC/RAC
UITS, Indiana University
(812)855-9916 http://www.indiana.edu/~rac/hpc
===============================================

• APPLICATION/octet-stream attachment: config.log.gz

• Next message: Manav Bhatia: "[OMPI users] compilation error in c++ debug mode"
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