Attached are the two library files you requested, also the output from
ompi_info.
I tried the work-around procedure you suggested, and it worked. I had to
also use it in 'ompi/mca/mpool/gm' and 'ompi/mca/ptl/gm', but I got a
successful make. Then, on a hunch, I went back and added
setenv LDFLAGS -L/usr/lib64
to my environment, did a 'make clean', reran configure (with the MPI2
support),
and did another 'make all install'. It worked. The ompi_info output is
attached.
I see 'gm' entries in the list, so I assume things are as expected. I
now must
have my sysadmin guy transport the installation to the compute nodes, but I
hope that will be routine.
Thanks for the help
Brian Barrett wrote:
>On Mar 10, 2006, at 8:35 AM, Brian Barrett wrote:
>
>
>
>>On Mar 9, 2006, at 11:37 PM, Tom Rosmond wrote:
>>
>>
>>
>>>Attached are output files from a build with the adjustments you
>>>suggested.
>>>
>>>setenv FC pgf90
>>>setenv F77 pgf90
>>>setenv CCPFLAGS -I/usr/include/gm
>>>
>>>./configure --prefix=/users/rosmond/ompi --with-gm
>>>
>>>The results are the same.
>>>
>>>
>>Yes, I figured the failure would still be there. Sorry to make you
>>do the extra work, but I needed a build without the extra issues so
>>that I could try to get a clearer picture of what is going on.
>>Unfortunately, it looks like libtool (the GNU project to build
>>portable libraries) is doing something I didn't expect and causing
>>issues. I'm passing this on to a friend of Open MPI who works on
>>the Libtool project and is extremely good at figuring these issues
>>out. I'll relay back what he recommends, but it might not be until
>>Monday.
>>
>>
>
>The Libtool expert was wondering if you could send the contents of
>the files /usr/lib/libgm.la and /usr/lib64/libgm.la. They should
>both be (fairly short) text files.
>
>Also, as a possible work-around, he suggests compiling from the top
>level like normal (just "make" or "make all") until the failure,
>changing directories into ompi/mca/btl/gm (where the failure
>occurred) and running "make LDFLAGS=-L/usr/lib64", then changing
>directories back to the top level of the Open MPI source code and
>running make (without the extra LDFLAGS option) again. Let me know
>if that works.
>
>Thanks,
>
>Brian
>
>
>
>
# libgm.la - a libtool library file
# Generated by ltmain.sh - GNU libtool 1.4.2a (1.922.2.100 2002/06/26 07:25:14)
#
# Please DO NOT delete this file!
# It is necessary for linking the library.
# The name that we can dlopen(3).
dlname='libgm.so.0'
# Names of this library.
library_names='libgm.so.0.0.0 libgm.so.0 libgm.so'
# The name of the static archive.
old_library='libgm.a'
# Libraries that this one depends upon.
dependency_libs=''
# Version information for libgm.
current=0
age=0
revision=0
# Is this an already installed library?
installed=yes
# Files to dlopen/dlpreopen
dlopen=''
dlpreopen=''
# Directory that this library needs to be installed in:
libdir='/opt/gm/lib'
# libgm.la - a libtool library file
# Generated by ltmain.sh - GNU libtool 1.4.2a (1.922.2.100 2002/06/26 07:25:14)
#
# Please DO NOT delete this file!
# It is necessary for linking the library.
# The name that we can dlopen(3).
dlname='libgm.so.0'
# Names of this library.
library_names='libgm.so.0.0.0 libgm.so.0 libgm.so'
# The name of the static archive.
old_library='libgm.a'
# Libraries that this one depends upon.
dependency_libs=''
# Version information for libgm.
current=0
age=0
revision=0
# Is this an already installed library?
installed=yes
# Files to dlopen/dlpreopen
dlopen=''
dlpreopen=''
# Directory that this library needs to be installed in:
libdir='/opt/gm/lib64'
Open MPI: 1.0.1r8453
Open MPI SVN revision: r8453
Open RTE: 1.0.1r8453
Open RTE SVN revision: r8453
OPAL: 1.0.1r8453
OPAL SVN revision: r8453
Prefix: /users/rosmond/ompi
Configured architecture: x86_64-unknown-linux-gnu
Configured by: rosmond
Configured on: Fri Mar 10 09:55:13 PST 2006
Configure host: cluster0
Built by: rosmond
Built on: Fri Mar 10 10:11:17 PST 2006
Built host: cluster0
C bindings: yes
C++ bindings: yes
Fortran77 bindings: yes (all)
Fortran90 bindings: yes
C compiler: gcc
C compiler absolute: /usr/bin/gcc
C++ compiler: g++
C++ compiler absolute: /usr/bin/g++
Fortran77 compiler: pgf90
Fortran77 compiler abs: /usr/pgi/linux86-64/6.1/bin/pgf90
Fortran90 compiler: pgf90
Fortran90 compiler abs: /usr/pgi/linux86-64/6.1/bin/pgf90
C profiling: yes
C++ profiling: yes
Fortran77 profiling: yes
Fortran90 profiling: yes
C++ exceptions: no
Thread support: posix (mpi: no, progress: no)
Internal debug support: no
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
libltdl support: 1
MCA memory: malloc_hooks (MCA v1.0, API v1.0, Component v1.0.1)
MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.0.1)
MCA maffinity: first_use (MCA v1.0, API v1.0, Component v1.0.1)
MCA maffinity: libnuma (MCA v1.0, API v1.0, Component v1.0.1)
MCA timer: linux (MCA v1.0, API v1.0, Component v1.0.1)
MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
MCA coll: basic (MCA v1.0, API v1.0, Component v1.0.1)
MCA coll: self (MCA v1.0, API v1.0, Component v1.0.1)
MCA coll: sm (MCA v1.0, API v1.0, Component v1.0.1)
MCA io: romio (MCA v1.0, API v1.0, Component v1.0.1)
MCA mpool: gm (MCA v1.0, API v1.0, Component v1.0.1)
MCA mpool: sm (MCA v1.0, API v1.0, Component v1.0.1)
MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.0.1)
MCA pml: teg (MCA v1.0, API v1.0, Component v1.0.1)
MCA ptl: gm (MCA v1.0, API v1.0, Component v1.0.1)
MCA ptl: self (MCA v1.0, API v1.0, Component v1.0.1)
MCA ptl: sm (MCA v1.0, API v1.0, Component v1.0.1)
MCA ptl: tcp (MCA v1.0, API v1.0, Component v1.0.1)
MCA btl: gm (MCA v1.0, API v1.0, Component v1.0.1)
MCA btl: self (MCA v1.0, API v1.0, Component v1.0.1)
MCA btl: sm (MCA v1.0, API v1.0, Component v1.0.1)
MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA topo: unity (MCA v1.0, API v1.0, Component v1.0.1)
MCA gpr: null (MCA v1.0, API v1.0, Component v1.0.1)
MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.0.1)
MCA gpr: replica (MCA v1.0, API v1.0, Component v1.0.1)
MCA iof: proxy (MCA v1.0, API v1.0, Component v1.0.1)
MCA iof: svc (MCA v1.0, API v1.0, Component v1.0.1)
MCA ns: proxy (MCA v1.0, API v1.0, Component v1.0.1)
MCA ns: replica (MCA v1.0, API v1.0, Component v1.0.1)
MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.0.1)
MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.0.1)
MCA ras: localhost (MCA v1.0, API v1.0, Component v1.0.1)
MCA ras: slurm (MCA v1.0, API v1.0, Component v1.0.1)
MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.0.1)
MCA rds: resfile (MCA v1.0, API v1.0, Component v1.0.1)
MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.0.1)
MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.0.1)
MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.0.1)
MCA rml: oob (MCA v1.0, API v1.0, Component v1.0.1)
MCA pls: daemon (MCA v1.0, API v1.0, Component v1.0.1)
MCA pls: fork (MCA v1.0, API v1.0, Component v1.0.1)
MCA pls: proxy (MCA v1.0, API v1.0, Component v1.0.1)
MCA pls: rsh (MCA v1.0, API v1.0, Component v1.0.1)
MCA pls: slurm (MCA v1.0, API v1.0, Component v1.0.1)
MCA sds: env (MCA v1.0, API v1.0, Component v1.0.1)
MCA sds: pipe (MCA v1.0, API v1.0, Component v1.0.1)
MCA sds: seed (MCA v1.0, API v1.0, Component v1.0.1)
MCA sds: singleton (MCA v1.0, API v1.0, Component v1.0.1)
MCA sds: slurm (MCA v1.0, API v1.0, Component v1.0.1)
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