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From: Luke Cyca (luke_at_[hidden])
Date: 2006-02-21 15:12:07


Hi,

I'm experiencing seemingly random crashes when running my program
with OpenMPI version 1.0.2a7r9094. My simulation runs fine through
lots of iterations, sometimes for several hours, and then quits with
the following output.

> Signal:11 info.si_errno:0(Success) si_code:1(SEGV_MAPERR)
> Failing at addr:0x37e3200
> [0] func:/usr/lib/libopal.so.0 [0x2aaaac0ab2da]
> [1] func:/lib/libpthread.so.0 [0x2aaaaacd04d0]
> [2] <My program's stack trace removed for NDA paranoia>
> *** End of error message ***
> [maltose:09314] mca_btl_tcp_frag_send: writev failed with errno=104
Sometimes the error gets reported by frag_recv instead:
> [glucose:09277] mca_btl_tcp_frag_recv: writev failed with errno=104

Error 104 corresponds to ECONNRESET "Connection reset by peer". In
all other situations though, my network seems to be operating well.
Running `ifconfig eth0` on any of the nodes reports no errors or
dropped packets.

I had the same behavior when using the 1.0.1r8453 release.

I'm unsure how to troubleshoot this further. Any help or suggestions
would be greatly appreciated.

Here's my ompi_info output:
> Open MPI: 1.0.2a7r9094
> Open MPI SVN revision: r9094
> Open RTE: 1.0.2a7r9094
> Open RTE SVN revision: r9094
> OPAL: 1.0.2a7r9094
> OPAL SVN revision: r9094
> Prefix: /usr/local
> Configured architecture: x86_64-unknown-linux-gnu
> Configured by: zymo
> Configured on: Mon Feb 20 15:56:27 PST 2006
> Configure host: idose
> Built by: zymo
> Built on: Mon Feb 20 16:14:53 PST 2006
> Built host: idose
> C bindings: yes
> C++ bindings: yes
> Fortran77 bindings: yes (all)
> Fortran90 bindings: no
> C compiler: gcc
> C compiler absolute: /usr/bin/gcc
> C++ compiler: g++
> C++ compiler absolute: /usr/bin/g++
> Fortran77 compiler: g77
> Fortran77 compiler abs: /usr/bin/g77
> Fortran90 compiler: none
> Fortran90 compiler abs: none
> C profiling: yes
> C++ profiling: yes
> Fortran77 profiling: yes
> Fortran90 profiling: no
> C++ exceptions: no
> Thread support: posix (mpi: no, progress: no)
> Internal debug support: no
> MPI parameter check: runtime
> Memory profiling support: no
> Memory debugging support: no
> libltdl support: 1
> MCA memory: malloc_hooks (MCA v1.0, API v1.0,
> Component v1.0.2)
> MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.0.2)
> MCA maffinity: first_use (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA timer: linux (MCA v1.0, API v1.0, Component v1.0.2)
> MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0)
> MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0)
> MCA coll: basic (MCA v1.0, API v1.0, Component v1.0.2)
> MCA coll: self (MCA v1.0, API v1.0, Component v1.0.2)
> MCA coll: sm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA io: romio (MCA v1.0, API v1.0, Component v1.0.2)
> MCA mpool: sm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pml: teg (MCA v1.0, API v1.0, Component v1.0.2)
> MCA bml: r2 (MCA v1.0, API v1.0, Component v1.0.2)
> MCA bml: r2 (MCA v1.0, API v1.0, Component v1.0.2)
> MCA ptl: self (MCA v1.0, API v1.0, Component v1.0.2)
> MCA ptl: sm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA ptl: tcp (MCA v1.0, API v1.0, Component v1.0.2)
> MCA btl: self (MCA v1.0, API v1.0, Component v1.0.2)
> MCA btl: sm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0)
> MCA topo: unity (MCA v1.0, API v1.0, Component v1.0.2)
> MCA gpr: null (MCA v1.0, API v1.0, Component v1.0.2)
> MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.0.2)
> MCA gpr: replica (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA iof: proxy (MCA v1.0, API v1.0, Component v1.0.2)
> MCA iof: svc (MCA v1.0, API v1.0, Component v1.0.2)
> MCA ns: proxy (MCA v1.0, API v1.0, Component v1.0.2)
> MCA ns: replica (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0)
> MCA ras: dash_host (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA ras: hostfile (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA ras: localhost (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA ras: slurm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA rds: hostfile (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA rds: resfile (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA rmaps: round_robin (MCA v1.0, API v1.0,
> Component v1.0.2)
> MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.0.2)
> MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA rml: oob (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pls: daemon (MCA v1.0, API v1.0, Component
> v1.0.1)
> MCA pls: fork (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pls: proxy (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pls: rsh (MCA v1.0, API v1.0, Component v1.0.2)
> MCA pls: slurm (MCA v1.0, API v1.0, Component v1.0.2)
> MCA sds: env (MCA v1.0, API v1.0, Component v1.0.2)
> MCA sds: pipe (MCA v1.0, API v1.0, Component v1.0.2)
> MCA sds: seed (MCA v1.0, API v1.0, Component v1.0.2)
> MCA sds: singleton (MCA v1.0, API v1.0, Component
> v1.0.2)
> MCA sds: slurm (MCA v1.0, API v1.0, Component v1.0.2)

____________
Luke Cyca
(604) 678-1388 ext. 32
luke_at_[hidden]
www.zymeworks.com