Making all in src make[1]: Entering directory `/radix-homes/balaji/tmp/hwloc/hwloc-0.9.1rc2/src' source='topology.c' object='topology.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o topology.lo topology.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology.c -fpic -DPIC -o .libs/topology.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC-W-0095-Type cast required for this conversion (topology.c: 627) PGC-W-0155-Pointer value created from a nonlong integral type (topology.c: 627) PGC-W-0095-Type cast required for this conversion (topology.c: 629) PGC-W-0155-Pointer value created from a nonlong integral type (topology.c: 629) PGC-W-0095-Type cast required for this conversion (topology.c: 712) PGC-W-0155-Pointer value created from a nonlong integral type (topology.c: 712) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology.c -o topology.o >/dev/null 2>&1 source='traversal.c' object='traversal.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o traversal.lo traversal.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c traversal.c -fpic -DPIC -o .libs/traversal.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c traversal.c -o traversal.o >/dev/null 2>&1 source='topology-synthetic.c' object='topology-synthetic.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o topology-synthetic.lo topology-synthetic.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-synthetic.c -fpic -DPIC -o .libs/topology-synthetic.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-synthetic.c -o topology-synthetic.o >/dev/null 2>&1 source='topology-xml.c' object='topology-xml.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o topology-xml.lo topology-xml.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-xml.c -fpic -DPIC -o .libs/topology-xml.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-xml.c -o topology-xml.o >/dev/null 2>&1 source='bind.c' object='bind.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o bind.lo bind.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c bind.c -fpic -DPIC -o .libs/bind.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c bind.c -o bind.o >/dev/null 2>&1 source='cpuset.c' object='cpuset.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o cpuset.lo cpuset.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c cpuset.c -fpic -DPIC -o .libs/cpuset.o PGC-W-0155-Long value is passed to a nonprototyped function - argument #1 (cpuset.c: 453) PGC-W-0155-Long value is passed to a nonprototyped function - argument #1 (cpuset.c: 489) PGC-W-0155-Long value is passed to a nonprototyped function - argument #1 (cpuset.c: 506) PGC-W-0155-Long value is passed to a nonprototyped function - argument #1 (cpuset.c: 507) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c cpuset.c -o cpuset.o >/dev/null 2>&1 source='topology-linux.c' object='topology-linux.lo' libtool=yes \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ /bin/bash ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o topology-linux.lo topology-linux.c libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-linux.c -fpic -DPIC -o .libs/topology-linux.o PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings libtool: compile: pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c topology-linux.c -o topology-linux.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link pgcc -g -version-number 0:0:0 -o libhwloc.la -rpath /usr/local/lib topology.lo traversal.lo topology-synthetic.lo topology-xml.lo bind.lo cpuset.lo topology-linux.lo -ltermcap libtool: link: pgcc -shared -fpic -DPIC .libs/topology.o .libs/traversal.o .libs/topology-synthetic.o .libs/topology-xml.o .libs/bind.o .libs/cpuset.o .libs/topology-linux.o -ltermcap -lc -Wl,-soname -Wl,libhwloc.so.0 -o .libs/libhwloc.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libhwloc.so.0" && ln -s "libhwloc.so.0.0.0" "libhwloc.so.0") libtool: link: (cd ".libs" && rm -f "libhwloc.so" && ln -s "libhwloc.so.0.0.0" "libhwloc.so") libtool: link: ar cru .libs/libhwloc.a topology.o traversal.o topology-synthetic.o topology-xml.o bind.o cpuset.o topology-linux.o libtool: link: ranlib .libs/libhwloc.a libtool: link: ( cd ".libs" && rm -f "libhwloc.la" && ln -s "../libhwloc.la" "libhwloc.la" ) make[1]: Leaving directory `/radix-homes/balaji/tmp/hwloc/hwloc-0.9.1rc2/src' Making all in utils make[1]: Entering directory `/radix-homes/balaji/tmp/hwloc/hwloc-0.9.1rc2/utils' source='lstopo.c' object='lstopo-lstopo.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo.o `test -f 'lstopo.c' || echo './'`lstopo.c PGC-W-0221-Redefinition of symbol CPU_SET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 20) PGC-W-0221-Redefinition of symbol CPU_CLR (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 21) PGC-W-0221-Redefinition of symbol CPU_ISSET (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 22) PGC-W-0221-Redefinition of symbol CPU_ZERO (/radix-homes/software/com/packages/pgi-9.0-4/linux86-64/9.0-4/include-gcc40/sched.h: 23) PGC/x86-64 Linux 9.0-4: compilation completed with warnings source='lstopo-color.c' object='lstopo-lstopo-color.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-color.o `test -f 'lstopo-color.c' || echo './'`lstopo-color.c source='lstopo-text.c' object='lstopo-lstopo-text.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-text.o `test -f 'lstopo-text.c' || echo './'`lstopo-text.c source='lstopo-draw.c' object='lstopo-lstopo-draw.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-draw.o `test -f 'lstopo-draw.c' || echo './'`lstopo-draw.c source='lstopo-fig.c' object='lstopo-lstopo-fig.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-fig.o `test -f 'lstopo-fig.c' || echo './'`lstopo-fig.c source='lstopo-cairo.c' object='lstopo-lstopo-cairo.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-cairo.o `test -f 'lstopo-cairo.c' || echo './'`lstopo-cairo.c PGC-W-0006-Empty translation unit (lstopo-cairo.c: 6) PGC/x86-64 Linux 9.0-4: compilation completed with warnings source='lstopo-xml.c' object='lstopo-lstopo-xml.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../config/depcomp \ pgcc -DHAVE_CONFIG_H -I. -I../include/private -I../include/hwloc -I../include -I../include -g -c -o lstopo-lstopo-xml.o `test -f 'lstopo-xml.c' || echo './'`lstopo-xml.c PGC-W-0006-Empty translation unit (lstopo-xml.c: 6) PGC/x86-64 Linux 9.0-4: compilation completed with warnings /bin/bash ../libtool --tag=CC --mode=link pgcc -g -L../src -o lstopo lstopo-lstopo.o lstopo-lstopo-color.o lstopo-lstopo-text.o lstopo-lstopo-draw.o lstopo-lstopo-fig.o lstopo-lstopo-cairo.o lstopo-lstopo-xml.o -lm ../src/libhwloc.la libtool: link: pgcc -g -o .libs/lstopo lstopo-lstopo.o lstopo-lstopo-color.o lstopo-lstopo-text.o lstopo-lstopo-draw.o lstopo-lstopo-fig.o lstopo-lstopo-cairo.o lstopo-lstopo-xml.o -L/home/balaji/tmp/hwloc/hwloc-0.9.1rc2/src -lm ../src/.libs/libhwloc.so -ltermcap ../src/.libs/libhwloc.so: undefined reference to `__CPU_SET' ../src/.libs/libhwloc.so: undefined reference to `__CPU_ZERO' make[1]: *** [lstopo] Error 2 make[1]: Leaving directory `/radix-homes/balaji/tmp/hwloc/hwloc-0.9.1rc2/utils' make: *** [all-recursive] Error 1