Here's a clue: ompi_coll_tuned_gather_intra_dec_fixed() changes its
algorithm for job sizes > 60 to some binomial method. I changed
the threshold to 100 and my NP64 jobs run fine. Now to try and
understand what about ompi_coll_tuned_gather_intra_binomial() is
causing these connect delays...
On 9/16/2010 1:01 PM, Steve Wise wrote:
Oops. One key typo here: This is the IMB-MPI1 gather test, not
barrier. :(
On 9/16/2010 12:05 PM, Steve Wise wrote:
Hi,
I'm debugging a performance problem with running IMB-MP1/barrier
in an NP64 cluster (8 nodes, 8 cores each). I'm using
openmpi-1.4.1 from the OFED-1.5.1 distribution. The BTL is
openib/iWARP via Chelsio's T3 RNIC. In short, a NP60 and
smaller run completes in a timely manner as expected, but NP61
and larger runs come to a crawl at the 8KB IO size and take
~5-10min to complete. It does complete though. It behaves this
way even if I run on > 8 nodes so there are available cores.
IE a NP64 on a 16 node cluster still behaves the same way even
though there are only 4 ranks on each node. So its apparently
not a thread starvation issue due to lack of cores. When in the
stalled state, I see on the order of 100 or so established iwarp
connections on each node. And the connection count increases
VERY slowly and sporadically (at its peak there are around 800
connections for a NP64 gather operation). In comparison, when I
run the <= NP60 runs, the connections quickly ramp up to the
expected amount. I added hooks in the openib BTL to track the
time it takes to setup each connection. In all runs, both <=
NP60 and > NP60, the average connection setup time is around
200ms. And the max setup time seen is never much above this
value. That tells me that its not individual connection setup
that is the issue. I then added printfs/fflushes in librdmacm
to visually see when a connection is attempted and when it is
accepted. When I run with these printfs, I see the connections
get setup quickly and evently in the <= NP60 case. Initially
when the job is started, I see a small flurry of connections
getting setup, then the run begins and at around 1KB IO size I
see a 2nd large flurry of connection setups. Then the test
continues and completes. With the >NP60 case, this second
round of connection setups is very sporadic and slow. Very
slow! I'll see little bursts of ~10-20 connections setup, then
long random pauses. The net is that full connection setup for
the job takes 5-10min. During this time the ranks are basically
spinning idle awaiting the connections to get setup. So I'm
concluding that something above the BTL layer isn't issuing the
endpoint connect requests in a timely manner.
Attached are 3 padb dumps during the stall. Anybody see
anything interesting in these?
Any ideas how I can further debug this? Once I get above the
openib BTL layer my eyes glaze over and I get lost quickly. :)
I would greatly appreciate any ideas from the OpenMPI experts!
Thanks in advance,
Steve.
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