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Subject: Re: [OMPI devel] 1.7 rc4 compilation error
From: Ralph Castain (rhc_at_[hidden])
Date: 2012-10-30 08:22:08


No to Lustre, and I didn't build static

I'm not sure what, if any, parallel file system might be present. In the case that works, I just built with no configure args other than prefix. ompi_info shows both romio and mpio built, but nothing more about what support they built internally.

On Oct 30, 2012, at 4:14 AM, Edgar Gabriel <gabriel_at_[hidden]> wrote:

> Ralph,
>
> just out curiosity: is there a lustre file system on the machine and is
> this a static build ?
>
> Thanks
> Edgar
>
> On 10/29/2012 9:17 PM, Ralph Castain wrote:
>> Hmmm...I added that directory and tried this on odin (which is an IB-based machine). Any MPI proc segfaults:
>>
>> Core was generated by `./hello'.
>> Program terminated with signal 11, Segmentation fault.
>> w#0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574
>> 574 src/inode.c: No such file or directory.
>> in src/inode.c
>> (gdb) where
>> #0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574
>> #1 0x00002aaaabd3f3e9 in _sysio_path_walk (parent=0x0, nd=0x7fffffffd8e0) at src/namei.c:216
>> #2 0x00002aaaabd3faad in _sysio_namei (parent=0x0, path=<value optimized out>, flags=0, intnt=0x7fffffffd950, pnop=0x7fffffffd970) at src/namei.c:505
>> #3 0x00002aaaabd3fd98 in open (path=0x2aaaac24280f "/sys/devices/system/node", flags=<value optimized out>) at src/open.c:179
>> #4 0x00002aaaabd43d5b in opendir (name=0x2aaaac24280f "/sys/devices/system/node") at src/stddir.c:60
>> #5 0x00002aaaac241825 in numa_max_node () from /usr/lib64/libnuma.so.1
>> #6 0x00002aaaac241d13 in numa_init () from /usr/lib64/libnuma.so.1
>> #7 0x00002aaaaaab845b in call_init () from /lib64/ld-linux-x86-64.so.2
>> #8 0x00002aaaaaab8565 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2
>> #9 0x00002aaaaaaabaaa in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
>> #10 0x0000000000000001 in ?? ()
>> #11 0x00007fffffffe03c in ?? ()
>> #12 0x0000000000000000 in ?? ()
>>
>> I got the same thing whether I excluded openib or not. I then ran on my Linux cluster, which doesn't have IB at all - and it ran fine. Also runs clean on the Mac. However, in both those cases, I had left IO romio enabled.
>>
>> Now on odin, I always disable-io-romio. So I tried deliberately enabling it, and everything works. So this appears to be something that the IO work has broken.
>>
>> Edgar: can you please fix --disable-io-romio?
>>
>> Thanks
>> Ralph
>>
>>
>>
>>
>> On Oct 29, 2012, at 11:55 AM, Edgar Gabriel <gabriel_at_[hidden]> wrote:
>>
>>> I'm sorry to add one more thing to the list, but beyond this file, it
>>> looks like also the entire ompi/mca/common/verbs/ directory is also
>>> missing in the 1.7 branch, but is required to compile the bcoll
>>> framework. It is there in the trunk, but missing in the 1.7 branch...
>>>
>>> Thanks
>>> Edgar
>>>
>>>
>>> On 10/26/2012 5:31 PM, Ralph Castain wrote:
>>>> Okay, I'll fix for tonights tarball.
>>>>
>>>> Thanks!
>>>>
>>>> On Oct 26, 2012, at 3:28 PM, "Shamis, Pavel" <shamisp_at_[hidden]> wrote:
>>>>
>>>>> There is a bug in makefile. The file existing in svn, but it is not listed in the Makefile.am. As a result, it wasn't pulled to the tarball.
>>>>>
>>>>> Pavel (Pasha) Shamis
>>>>> ---
>>>>> Computer Science Research Group
>>>>> Computer Science and Math Division
>>>>> Oak Ridge National Laboratory
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Oct 26, 2012, at 2:33 PM, Edgar Gabriel wrote:
>>>>>
>>>>> we have trouble compiling the 1.7 series on a machine in Dresden.
>>>>> Specifically, we receive an error message when compiling the
>>>>> bcol/iboffload component (other infiniband components compile fine).
>>>>>
>>>>> Any idea/suggestions what we might be doing wrong or what to look for?
>>>>>
>>>>> make[2]: Entering directory
>>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload'
>>>>> CC bcol_iboffload_module.lo
>>>>> CC bcol_iboffload_mca.lo
>>>>> CC bcol_iboffload_endpoint.lo
>>>>> CC bcol_iboffload_frag.lo
>>>>> In file included from bcol_iboffload_frag.c:16:0:
>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>>> file or directory
>>>>> compilation terminated.
>>>>> make[2]: *** [bcol_iboffload_frag.lo] Error 1
>>>>> make[2]: *** Waiting for unfinished jobs....
>>>>> In file included from bcol_iboffload_mca.c:18:0:
>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>>> file or directory
>>>>> compilation terminated.
>>>>> make[2]: *** [bcol_iboffload_mca.lo] Error 1
>>>>> In file included from bcol_iboffload_endpoint.c:23:0:
>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>>> file or directory
>>>>> compilation terminated.
>>>>> make[2]: *** [bcol_iboffload_endpoint.lo] Error 1
>>>>> In file included from bcol_iboffload_module.c:39:0:
>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>>> file or directory
>>>>> compilation terminated.
>>>>> make[2]: *** [bcol_iboffload_module.lo] Error 1
>>>>> make[2]: Leaving directory
>>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload'
>>>>> make[1]: *** [all-recursive] Error 1
>>>>> make[1]: Leaving directory `/home/h2/gabriel/openmpi-1.7rc4/ompi'
>>>>> make: *** [all-recursive] Error 1
>>>>>
>>>>> Thanks
>>>>> Edgar
>>>>>
>>>>> --
>>>>> Edgar Gabriel
>>>>> Associate Professor
>>>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu
>>>>> Department of Computer Science University of Houston
>>>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
>>>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
>>>>>
>>>>> <signature.asc>_______________________________________________
>>>>> devel mailing list
>>>>> devel_at_[hidden]<mailto:devel_at_[hidden]>
>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> devel mailing list
>>>>> devel_at_[hidden]
>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>>>
>>>>
>>>> _______________________________________________
>>>> devel mailing list
>>>> devel_at_[hidden]
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>>>
>>>
>>> --
>>> Edgar Gabriel
>>> Associate Professor
>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu
>>> Department of Computer Science University of Houston
>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
>>>
>>> _______________________________________________
>>> devel mailing list
>>> devel_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>
>>
>> _______________________________________________
>> devel mailing list
>> devel_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>
>
> --
> Edgar Gabriel
> Associate Professor
> Parallel Software Technologies Lab http://pstl.cs.uh.edu
> Department of Computer Science University of Houston
> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
>
> _______________________________________________
> devel mailing list
> devel_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/devel