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Subject: Re: [OMPI devel] 1.7 rc4 compilation error
From: Edgar Gabriel (gabriel_at_[hidden])
Date: 2012-10-30 07:14:12


Ralph,

just out curiosity: is there a lustre file system on the machine and is
this a static build ?

Thanks
Edgar

On 10/29/2012 9:17 PM, Ralph Castain wrote:
> Hmmm...I added that directory and tried this on odin (which is an IB-based machine). Any MPI proc segfaults:
>
> Core was generated by `./hello'.
> Program terminated with signal 11, Segmentation fault.
> w#0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574
> 574 src/inode.c: No such file or directory.
> in src/inode.c
> (gdb) where
> #0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574
> #1 0x00002aaaabd3f3e9 in _sysio_path_walk (parent=0x0, nd=0x7fffffffd8e0) at src/namei.c:216
> #2 0x00002aaaabd3faad in _sysio_namei (parent=0x0, path=<value optimized out>, flags=0, intnt=0x7fffffffd950, pnop=0x7fffffffd970) at src/namei.c:505
> #3 0x00002aaaabd3fd98 in open (path=0x2aaaac24280f "/sys/devices/system/node", flags=<value optimized out>) at src/open.c:179
> #4 0x00002aaaabd43d5b in opendir (name=0x2aaaac24280f "/sys/devices/system/node") at src/stddir.c:60
> #5 0x00002aaaac241825 in numa_max_node () from /usr/lib64/libnuma.so.1
> #6 0x00002aaaac241d13 in numa_init () from /usr/lib64/libnuma.so.1
> #7 0x00002aaaaaab845b in call_init () from /lib64/ld-linux-x86-64.so.2
> #8 0x00002aaaaaab8565 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2
> #9 0x00002aaaaaaabaaa in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
> #10 0x0000000000000001 in ?? ()
> #11 0x00007fffffffe03c in ?? ()
> #12 0x0000000000000000 in ?? ()
>
> I got the same thing whether I excluded openib or not. I then ran on my Linux cluster, which doesn't have IB at all - and it ran fine. Also runs clean on the Mac. However, in both those cases, I had left IO romio enabled.
>
> Now on odin, I always disable-io-romio. So I tried deliberately enabling it, and everything works. So this appears to be something that the IO work has broken.
>
> Edgar: can you please fix --disable-io-romio?
>
> Thanks
> Ralph
>
>
>
>
> On Oct 29, 2012, at 11:55 AM, Edgar Gabriel <gabriel_at_[hidden]> wrote:
>
>> I'm sorry to add one more thing to the list, but beyond this file, it
>> looks like also the entire ompi/mca/common/verbs/ directory is also
>> missing in the 1.7 branch, but is required to compile the bcoll
>> framework. It is there in the trunk, but missing in the 1.7 branch...
>>
>> Thanks
>> Edgar
>>
>>
>> On 10/26/2012 5:31 PM, Ralph Castain wrote:
>>> Okay, I'll fix for tonights tarball.
>>>
>>> Thanks!
>>>
>>> On Oct 26, 2012, at 3:28 PM, "Shamis, Pavel" <shamisp_at_[hidden]> wrote:
>>>
>>>> There is a bug in makefile. The file existing in svn, but it is not listed in the Makefile.am. As a result, it wasn't pulled to the tarball.
>>>>
>>>> Pavel (Pasha) Shamis
>>>> ---
>>>> Computer Science Research Group
>>>> Computer Science and Math Division
>>>> Oak Ridge National Laboratory
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Oct 26, 2012, at 2:33 PM, Edgar Gabriel wrote:
>>>>
>>>> we have trouble compiling the 1.7 series on a machine in Dresden.
>>>> Specifically, we receive an error message when compiling the
>>>> bcol/iboffload component (other infiniband components compile fine).
>>>>
>>>> Any idea/suggestions what we might be doing wrong or what to look for?
>>>>
>>>> make[2]: Entering directory
>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload'
>>>> CC bcol_iboffload_module.lo
>>>> CC bcol_iboffload_mca.lo
>>>> CC bcol_iboffload_endpoint.lo
>>>> CC bcol_iboffload_frag.lo
>>>> In file included from bcol_iboffload_frag.c:16:0:
>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>> file or directory
>>>> compilation terminated.
>>>> make[2]: *** [bcol_iboffload_frag.lo] Error 1
>>>> make[2]: *** Waiting for unfinished jobs....
>>>> In file included from bcol_iboffload_mca.c:18:0:
>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>> file or directory
>>>> compilation terminated.
>>>> make[2]: *** [bcol_iboffload_mca.lo] Error 1
>>>> In file included from bcol_iboffload_endpoint.c:23:0:
>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>> file or directory
>>>> compilation terminated.
>>>> make[2]: *** [bcol_iboffload_endpoint.lo] Error 1
>>>> In file included from bcol_iboffload_module.c:39:0:
>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such
>>>> file or directory
>>>> compilation terminated.
>>>> make[2]: *** [bcol_iboffload_module.lo] Error 1
>>>> make[2]: Leaving directory
>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload'
>>>> make[1]: *** [all-recursive] Error 1
>>>> make[1]: Leaving directory `/home/h2/gabriel/openmpi-1.7rc4/ompi'
>>>> make: *** [all-recursive] Error 1
>>>>
>>>> Thanks
>>>> Edgar
>>>>
>>>> --
>>>> Edgar Gabriel
>>>> Associate Professor
>>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu
>>>> Department of Computer Science University of Houston
>>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
>>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
>>>>
>>>> <signature.asc>_______________________________________________
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>>>>
>>>>
>>>> _______________________________________________
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>>>
>>>
>>> _______________________________________________
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>>
>> --
>> Edgar Gabriel
>> Associate Professor
>> Parallel Software Technologies Lab http://pstl.cs.uh.edu
>> Department of Computer Science University of Houston
>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA
>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
>>
>> _______________________________________________
>> devel mailing list
>> devel_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>
>
> _______________________________________________
> devel mailing list
> devel_at_[hidden]
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>

-- 
Edgar Gabriel
Associate Professor
Parallel Software Technologies Lab      http://pstl.cs.uh.edu
Department of Computer Science          University of Houston
Philip G. Hoffman Hall, Room 524        Houston, TX-77204, USA
Tel: +1 (713) 743-3857                  Fax: +1 (713) 743-3335