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Subject: Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
From: Matthias Jurenz (matthias.jurenz_at_[hidden])
Date: 2009-01-14 05:05:08


Another workaround should be to disable the I/O tracing feature of VT
by adding the configure option

        '--with-contrib-vt-flags=--disable-iotrace'

That will have the effect that the upcoming OMPI-rpm's have no support
for I/O tracing, but in our opinion it is not so bad...

Furthermore, we could add the configure option in
'ompi/contrib/vt/configure.m4' to retain the feature-consistency between
the rpm's and the source packages.

Matthias

On Tue, 2009-01-13 at 17:13 +0200, Lenny Verkhovsky wrote:
> I don't want to move changes ( default value of the flag), since there
> are important people, for whom it works :)
> I also think that this is VT issue, but I guess we are the only one
> who experience the errors.
>
> we can now overwrite this params from the environment as a workaround,
> Mike comitted buildrpm.sh script to the trunk r20253 that allows
> overwriting params from the environment.
>
> we observed the problem on CentOS 5.2 with boundled gcc and RedHat 5.2
> with boundled gcc.
>
> #uname -a
> Linux elfit1 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64
> x86_64 x86_64 GNU/Linux
>
> #lsb_release -a
> LSB Version:
> :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1-amd64:graphics-3.1-ia32:graphics-3.1-noarch
> Distributor ID: CentOS
> Description: CentOS release 5.2 (Final)
> Release: 5.2
> Codename: Final
>
> gcc version 4.1.2 20071124 (Red Hat 4.1.2-42)
>
> Best regards,
> Lenny.
>
>
> On Tue, Jan 13, 2009 at 4:40 PM, Jeff Squyres <jsquyres_at_[hidden]> wrote:
> > I'm still guessing that this is a distro / compiler issue -- I can build
> > with the default flags just fine...?
> >
> > Can you specify what distro / compiler you were using?
> >
> > Also, if you want to move the changes that have been made to buildrpm.sh to
> > the v1.3 branch, just file a CMR. That file is not included in release
> > tarballs, so Tim can move it over at any time.
> >
> >
> >
> > On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote:
> >
> >> it seems that setting use_default_rpm_opt_flags to 0 solves the problem.
> >> Maybe vt developers should take a look on it.
> >>
> >> Lenny.
> >>
> >>
> >> On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres <jsquyres_at_[hidden]> wrote:
> >>>
> >>> This sounds like a distro/compiler version issue.
> >>>
> >>> Can you narrow down the issue at all?
> >>>
> >>>
> >>> On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote:
> >>>
> >>>> it doesnt happen if I do autogen, configure and make install,
> >>>> only when I try to make an rpm from the tar file.
> >>>>
> >>>>
> >>>>
> >>>> On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres <jsquyres_at_[hidden]> wrote:
> >>>>>
> >>>>> This doesn't happen in a normal build of the same tree?
> >>>>>
> >>>>> I ask because both 1.3r20226 builds fine for me manually (i.e.,
> >>>>> ./configure;make and buildrpm.sh).
> >>>>>
> >>>>>
> >>>>> On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote:
> >>>>>
> >>>>>> Hi,
> >>>>>>
> >>>>>> I am trying to build rpm from nightly snaposhots of 1.3
> >>>>>>
> >>>>>> with the downloaded buildrpm.sh and ompi.spec file from
> >>>>>> http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/
> >>>>>>
> >>>>>> I am getting this error
> >>>>>> .....................
> >>>>>> Making all in vtlib
> >>>>>> make[5]: Entering directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib'
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c
> >>>>>> -o
> >>>>>> vt_comp_gnu.o vt_comp_gnu.c
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o
> >>>>>> vt_memhook.o vt_memhook.c
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o
> >>>>>> vt_memreg.o vt_memreg.c
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o
> >>>>>> vt_iowrap.o vt_iowrap.c
> >>>>>> mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF
> >>>>>> .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c
> >>>>>> mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
> >>>>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
> >>>>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
> >>>>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
> >>>>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
> >>>>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> >>>>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> >>>>>> -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c
> >>>>>> -o
> >>>>>> rfg_regions.o rfg_regions.c
> >>>>>> vt_iowrap.c:1242: error: expected declaration specifiers or '...'
> >>>>>> before
> >>>>>> numeric constant
> >>>>>> vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
> >>>>>> mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
> >>>>>> make[5]: *** [vt_iowrap.o] Error 1
> >>>>>> make[5]: *** Waiting for unfinished jobs....
> >>>>>> mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
> >>>>>> mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
> >>>>>> make[5]: Leaving directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib'
> >>>>>> make[4]: *** [all-recursive] Error 1
> >>>>>> make[4]: Leaving directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt'
> >>>>>> make[3]: *** [all] Error 2
> >>>>>> make[3]: Leaving directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt'
> >>>>>> make[2]: *** [all-recursive] Error 1
> >>>>>> make[2]: Leaving directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi/contrib/vt'
> >>>>>> make[1]: *** [all-recursive] Error 1
> >>>>>> make[1]: Leaving directory
> >>>>>>
> >>>>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/
> >>>>>> openmpi-1.3rc3r20226/ompi'
> >>>>>> make: *** [all-recursive] Error 1
> >>>>>> error: Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
> >>>>>>
> >>>>>>
> >>>>>> RPM build errors:
> >>>>>> Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> RPM build errors:
> >>>>>> Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
> >>>>>>
> >>>>>>
> >>>>>> full error.log attached
> >>>>>>
> >>>>>>
> >>>>>> thanks,
> >>>>>> Lenny.
> >>>>>> <ompi.ompi_build.31401.log><mime-attachment.txt>
> >>>>>
> >>>>>
> >>>>> --
> >>>>> Jeff Squyres
> >>>>> Cisco Systems
> >>>>>
> >>>>> _______________________________________________
> >>>>> devel mailing list
> >>>>> devel_at_[hidden]
> >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
> >>>>>
> >>>> _______________________________________________
> >>>> devel mailing list
> >>>> devel_at_[hidden]
> >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
> >>>
> >>>
> >>> --
> >>> Jeff Squyres
> >>> Cisco Systems
> >>>
> >>> _______________________________________________
> >>> devel mailing list
> >>> devel_at_[hidden]
> >>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
> >>>
> >> _______________________________________________
> >> devel mailing list
> >> devel_at_[hidden]
> >> http://www.open-mpi.org/mailman/listinfo.cgi/devel
> >
> >
> > --
> > Jeff Squyres
> > Cisco Systems
> >
> > _______________________________________________
> > devel mailing list
> > devel_at_[hidden]
> > http://www.open-mpi.org/mailman/listinfo.cgi/devel
> >
> _______________________________________________
> devel mailing list
> devel_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>