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Subject: Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
From: Jeff Squyres (jsquyres_at_[hidden])
Date: 2009-01-11 07:40:36


This sounds like a distro/compiler version issue.

Can you narrow down the issue at all?

On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote:

> it doesnt happen if I do autogen, configure and make install,
> only when I try to make an rpm from the tar file.
>
>
>
> On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres <jsquyres_at_[hidden]>
> wrote:
>> This doesn't happen in a normal build of the same tree?
>>
>> I ask because both 1.3r20226 builds fine for me manually (i.e.,
>> ./configure;make and buildrpm.sh).
>>
>>
>> On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote:
>>
>>> Hi,
>>>
>>> I am trying to build rpm from nightly snaposhots of 1.3
>>>
>>> with the downloaded buildrpm.sh and ompi.spec file from
>>> http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/
>>>
>>> I am getting this error
>>> .....................
>>> Making all in vtlib
>>> make[5]: Entering directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib'
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo
>>> -c -o
>>> vt_comp_gnu.o vt_comp_gnu.c
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -
>>> c -o
>>> vt_memhook.o vt_memhook.c
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o
>>> vt_memreg.o vt_memreg.c
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o
>>> vt_iowrap.o vt_iowrap.c
>>> mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF
>>> .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o
>>> vt_iowrap_helper.c
>>> mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
>>> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
>>> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
>>> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
>>> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG
>>> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
>>> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
>>> -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo
>>> -c -o
>>> rfg_regions.o rfg_regions.c
>>> vt_iowrap.c:1242: error: expected declaration specifiers or '...'
>>> before
>>> numeric constant
>>> vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
>>> mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
>>> make[5]: *** [vt_iowrap.o] Error 1
>>> make[5]: *** Waiting for unfinished jobs....
>>> mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
>>> mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
>>> make[5]: Leaving directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib'
>>> make[4]: *** [all-recursive] Error 1
>>> make[4]: Leaving directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt'
>>> make[3]: *** [all] Error 2
>>> make[3]: Leaving directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi/contrib/vt/vt'
>>> make[2]: *** [all-recursive] Error 1
>>> make[2]: Leaving directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi/contrib/vt'
>>> make[1]: *** [all-recursive] Error 1
>>> make[1]: Leaving directory
>>> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/
>>> BUILD/
>>> openmpi-1.3rc3r20226/ompi'
>>> make: *** [all-recursive] Error 1
>>> error: Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
>>>
>>>
>>> RPM build errors:
>>> Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
>>>
>>>
>>>
>>> RPM build errors:
>>> Bad exit status from /var/tmp/rpm-tmp.32080 (%build)
>>>
>>>
>>> full error.log attached
>>>
>>>
>>> thanks,
>>> Lenny.
>>> <ompi.ompi_build.31401.log><mime-attachment.txt>
>>
>>
>> --
>> Jeff Squyres
>> Cisco Systems
>>
>> _______________________________________________
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>> http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>
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-- 
Jeff Squyres
Cisco Systems