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Subject: Re: [OMPI devel] Checkpoint/Restart svn trunk
From: Jeff Squyres (jsquyres_at_[hidden])
Date: 2008-08-11 19:28:22


This is likely to two things:

- we just made some minor changes to the session directory stuff
- the checkpoint/restart guy (Josh) is off on vacation for about 3 weeks

I'll file a ticket about this so that he's aware of it and can fix it
when he returns.

Thanks for the heads-up!

On Aug 11, 2008, at 7:16 PM, Caciano Machado wrote:

> I found that open mpi is looking for the file contact.txt in the wrong
> directory. It always searches the file in the directory
> "/tmp/openmpi-sessions-root_at_debian_0/<MPIRUN PID>/" but this file
> exists only in "/tmp/openmpi-sessions-root_at_debian_0/<MPIRUN PID>/0".
> When I copy contact.txt to the directory where open mpi searches, then
> "ompi-ps" and "ompi-checkpoint" works.
>
> On Mon, Aug 11, 2008 at 4:06 PM, Caciano Machado <caciano_at_[hidden]>
> wrote:
>> Hi,
>>
>> I'm trying to run the last checkpoint/restart (rev 19235) but ompi is
>> showing the following error in "ompi-checkpoint".
>>
>> It seems to be something in function "orte_list_local_hnps" of the
>> file orte/util/hnp_contact.c. I'm using BLCR 0.7.2 and it's working
>> correctly with the example applications.
>>
>> ################################################################
>> root_at_debian:~/pp# ompi-clean
>> root_at_debian:~/pp# mpirun -machinefile machinefile -np 2 -am
>> ft-enable-cr -v -d pp 1 2 1000000
>> [debian:27936] procdir: /tmp/openmpi-sessions-root_at_debian_0/31810/0/0
>> [debian:27936] jobdir: /tmp/openmpi-sessions-root_at_debian_0/31810/0
>> [debian:27936] top: openmpi-sessions-root_at_debian_0
>> [debian:27936] tmp: /tmp
>> [debian:27936] [[31810,0],0] hostfile: checking hostfile
>> machinefile for nodes
>> [debian:27936] [[31810,0],0] hostfile: filtering nodes through
>> hostfile machinefile
>> [debian:27936] progressed_wait: base/plm_base_launch_support.c 436
>> [debian:27940] procdir: /tmp/openmpi-sessions-root_at_debian_0/31810/0/1
>> [debian:27940] jobdir: /tmp/openmpi-sessions-root_at_debian_0/31810/0
>> [debian:27940] top: openmpi-sessions-root_at_debian_0
>> [debian:27940] tmp: /tmp
>> [debian:27936] defining message event: base/
>> plm_base_launch_support.c 400
>> [debian:27936] defining message event: grpcomm_bad_module.c 183
>> [debian:27936] progressed_wait: base/plm_base_launch_support.c 679
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27936] defining message event: orted/orted_comm.c 382
>> [debian:27936] [[31810,0],0] node[0].name debian daemon 0 arch
>> ffca0200
>> [debian:27936] [[31810,0],0] node[1].name debian daemon 1 arch
>> ffca0200
>> [debian:27936] defining message event: base/odls_base_default_fns.c
>> 1060
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay sending relay msg
>> to [[31810,0],1]
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,0],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27940] defining message event: orted/orted_comm.c 382
>> [debian:27940] [[31810,0],1] node[0].name debian daemon 0 arch
>> ffca0200
>> [debian:27940] [[31810,0],1] node[1].name debian daemon 1 arch
>> ffca0200
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay - recipient
>> list is empty!
>> [debian:27936] defining message event: base/
>> plm_base_launch_support.c 635
>> [debian:27936] Info: Setting up debugger process table for
>> applications
>> MPIR_being_debugged = 0
>> MPIR_debug_state = 1
>> MPIR_partial_attach_ok = 1
>> MPIR_i_am_starter = 0
>> MPIR_proctable_size = 2
>> MPIR_proctable:
>> (i, host, exe, pid) = (0, debian, /root/pp/pp, 27941)
>> (i, host, exe, pid) = (1, debian, /root/pp/pp, 27942)
>> [debian:27942] procdir: /tmp/openmpi-sessions-root_at_debian_0/31810/1/1
>> [debian:27941] procdir: /tmp/openmpi-sessions-root_at_debian_0/31810/1/0
>> [debian:27941] jobdir: /tmp/openmpi-sessions-root_at_debian_0/31810/1
>> [debian:27941] top: openmpi-sessions-root_at_debian_0
>> [debian:27941] tmp: /tmp
>> [debian:27942] jobdir: /tmp/openmpi-sessions-root_at_debian_0/31810/1
>> [debian:27942] top: openmpi-sessions-root_at_debian_0
>> [debian:27942] tmp: /tmp
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],0] for tag 1
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],1]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],1] for tag 1
>> [debian:27936] defining message event: base/routed_base_receive.c 153
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27941] progressed_wait: base/routed_base_register_sync.c 104
>> [debian:27942] progressed_wait: base/routed_base_register_sync.c 104
>> [debian:27941] [[31810,1],0] node[0].name debian daemon 0 arch
>> ffca0200
>> [debian:27941] [[31810,1],0] node[1].name debian daemon 1 arch
>> ffca0200
>> [debian:27942] [[31810,1],1] node[0].name debian daemon 0 arch
>> ffca0200
>> [debian:27942] [[31810,1],1] node[1].name debian daemon 1 arch
>> ffca0200
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],0] for tag 1
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27941] progressed_wait: grpcomm_bad_module.c 394
>> [debian:27936] [[31810,0],0] orted_recv_cmd: received message from
>> [[31810,0],1]
>> [debian:27936] defining message event: orted/orted_comm.c 277
>> [debian:27936] [[31810,0],0] orted_recv_cmd: reissued recv
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor called by
>> [[31810,0],1] for tag 1
>> [debian:27936] defining message event: grpcomm_bad_module.c 183
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27936] defining message event: orted/orted_comm.c 382
>> [debian:27936] [[31810,0],0] orted:comm:message_local_procs
>> delivering
>> message to job [31810,1] tag 15
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay sending relay msg
>> to [[31810,0],1]
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],1]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],1] for tag 1
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,0],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27940] defining message event: orted/orted_comm.c 382
>> [debian:27940] [[31810,0],1] orted:comm:message_local_procs
>> delivering
>> message to job [31810,1] tag 15
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay - recipient
>> list is empty!
>> [debian:27942] progressed_wait: grpcomm_bad_module.c 394
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],1]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],1] for tag 1
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27942] progressed_wait: grpcomm_bad_module.c 270
>> [debian:27936] [[31810,0],0] orted_recv_cmd: received message from
>> [[31810,0],1]
>> [debian:27936] defining message event: orted/orted_comm.c 277
>> [debian:27936] [[31810,0],0] orted_recv_cmd: reissued recv
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor called by
>> [[31810,0],1] for tag 1
>> [debian:27936] defining message event: grpcomm_bad_module.c 183
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27936] defining message event: orted/orted_comm.c 382
>> [debian:27936] [[31810,0],0] orted:comm:message_local_procs
>> delivering
>> message to job [31810,1] tag 17
>> [debian:27936] [[31810,0],0] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay
>> [debian:27936] [[31810,0],0] orte:daemon:send_relay sending relay msg
>> to [[31810,0],1]
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,1],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,1],0] for tag 1
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orted_recv_cmd: received message from
>> [[31810,0],0]
>> [debian:27940] defining message event: orted/orted_comm.c 277
>> [debian:27940] [[31810,0],1] orted_recv_cmd: reissued recv
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor called by
>> [[31810,0],0] for tag 1
>> [debian:27940] defining message event: orted/orted_comm.c 382
>> [debian:27940] [[31810,0],1] orted:comm:message_local_procs
>> delivering
>> message to job [31810,1] tag 17
>> [debian:27940] [[31810,0],1] orte:daemon:cmd:processor: processing
>> commands completed
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay
>> [debian:27940] [[31810,0],1] orte:daemon:send_relay - recipient
>> list is empty!
>> [debian:27941] progressed_wait: grpcomm_bad_module.c 270
>> #
>> # ping-pong com MPI
>> #
>> # msgs from 1 to 2 bytes
>> # results are the mean of 1000000 repetitions for each msg size
>> # Tue Aug 12 06:26:29 2008
>> #
>> # size lat (us) bw (MB/s)
>>
>> ################################################################
>> 27936 pts/1 S+ 0:00 mpirun -machinefile machinefile -np 2 -am
>> ft-enable-cr -v -d pp 1 2 1000000
>> 27937 pts/1 S+ 0:00 /usr/bin/ssh -x debian orted --debug
>> --heartbeat 0 -mca ess env -mca orte_ess_jobid 2084700160
>> 27938 ? Ss 0:00 sshd: root_at_notty
>> 27940 ? Ss 0:00 orted --debug --heartbeat 0 -mca ess env
>> -mca orte_ess_jobid 2084700160 -mca orte_ess_vpid 1 -mc
>> 27941 ? Rl 0:21 pp 1 2 1000000
>> 27942 ? Rl 0:21 pp 1 2 1000000
>> 28021 pts/0 R+ 0:00 ps xa
>>
>> root_at_debian:~/pp# ompi-checkpoint 27936 -v
>> [debian:28022] [[31764,0],0] ORTE_ERROR_LOG: Not found in file
>> orte-checkpoint.c at line 395
>> [debian:28022] HNP with PID 27936 Not found!
>>
>> ################################################################
>>
>> Regards,
>> Caciano Machado
>> Computer Science Graduate Student/UFRGS
>>
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-- 
Jeff Squyres
Cisco Systems